Im not sure if its just me but being in utility mode has the same effect as being in cheat mode as in each time i click in utility mode it just send the items to my inventory. hopefully this fixes itself in the new update if not i can always mess around with the mods myself to see what is happening, also to note is centre click to auto rearrange chest function is not available and im led to belive this is from the same mod.
When I set it to Utility mode it only showed the recipe in 'greyed out' so I could simply fill in the grid with the corresponding items from my inventory. I did notice you could click on the item to the right and it would 'give' you the maximum of the item in your hand but not let you actually put it in your inventory. This I assumed was a part of the mod and as long as you couldn't just give yourself stuff, I was happy to go along with it. If this is not the case as you mention, then I'll endeavour to rectify it as cheating is not something I would want in our mod.
The auto arrange you speak of is from Inventory Tweeks which I will be including in the update. I did check to see if it had the '?' feature you spoke of and couldn't find it. That's when I rang SirJAH888 and he alerted me to the Utility Mode, something I wasn't familiar with as I personally don't believe in cheating my way through a game. I want Inventory Tweeks mainly for auto-refill but I did notice it also has 'centre' click for re-arranging your inventory and an ability to pre-determine where certain items can be prioritised in your grid.
Thanks for the heads up..........