Basically thats what ItemRestrict does.
/ires ban <banType> <id-datavalue>
Ban type should be world if you want to remove an already existing item or ownership if you want to prevent crafting an item.
/ires ban world 138 Would remove any beacons placed in the world
/ires ban ownership 138 Would remove any beacons that are in player inventories, also prevents players from picking them up or taking them from inventories or carfting them.
It might be possible to get an item using another crafting table or Applied energistics crafting. To disable the crafting of an item, it is best to use minetweaker.