Hi, here's my base in my current world:
http://imgur.com/a/LhjFH#0
The first picture shows my main building in the center, with bee room and QED on the left and my smeltery plus AE autocrafters on the right.
The second and third images show my chargers and inscribers for crafting charged certus and processors. There are 32 chargers and 64 inscribers, of which half are for printed circuits and half are for finished processors. The crafting is managed my SFM and can be requested through my AE system.
The fourth image shows my QED, while the fifth and sixth ones show my smeltery and the (empty) room under it. The next two images show my industrial apiaries and bee machines and conversion monitors for accessing labware and samples. I have a subnet of an ae system that holds all my bees and bee liquids.
My draconic energy core is fourth tier and only has about 500 million of 9.88 billion RF stored. My main AE system access includes a crafting terminal for accessing things and crafting, pattern terminal for making patters, liquids terminal to access liquids, and interface terminal to blank patterns into my system. My main machines are all to the right of that, with machines from EnderIO, TE, Draconic Evolution, Mekanism, and Forestry so far. To the left of my AE system I have my stuff for Project E, Mystcraft, brewing potions, and an anvil for upgrading my dark steel armor and sword. I also set up my buildcraft lasers in table in the middle of the room because I had room.
My AE system includes deep storage units for basic things like cobble and a few chisel blocks like limestone. It also has a unifier to convert sulfur from machine-made TE sulfur to Railcraft sulfur gained in mining. My ore processing system used SAG Mills with dark steel balls and max capacitors to break down ores and then redstone furnaces at full speed to smelt the results. All items and liquids come through the tesseract into the interfaces to be stored. The tesseract for power draws from my draconic energy core.
My AE level has autocrafting with assemblers in the center of the room, the crafting units on one side, and liquids stored in bedrockium barrels. Left to right, I currently have water, lava, sludge, sewage, essence, milk, and oil, plus the liquids that are in my bee room.
My animal pens contain five each of sheep, pigs, and cows. All three pens have sewers to collect sewage, and the sheep and cow pens have ranchers to collect wool and milk, respectively.
The lowest current level in my base has my seven magmatic dynamos each upgraded twice to produce 320 rf/t. The power is sent through tesseract to be stored in my draconic energy core. The stirling generator isn't currently being used.
Finally, I have portals to my mining world, the nether, end, and last millenium. The last millenium contains my farms, of which there are currently only ones for sugar cane and oak trees. Both farms use fertilized dirt from Random Things so water is not needed and growth is faster.