I have a 3-point setup, connected via a steam locomotive that does the rounds pulling one storage cart and a chunk loader cart. It would be simpler, sans-train, but I don't like setting up a quarry within sight of my base. It looks dumb. I'd rather do 3 huge areas next to each other, then move the quarry's powerbase to the next spot, clearing out hundreds of consecutive chunks far enough away that I don't have to see it.
At the tree farm my train picks up wood produced by a Steve's Carts tree harvester. I haven't yet started using the barrels of saplings and apples. I've heard they can be useful for something?
The wood gets shipped back to my base where it is sent to 14 coke ovens. The train then picks up charcoal.
At the quarry the charcoal is unloaded and cycled into a HP boiler which runs the quarry.
The quarry's output was going to be handled by a train too, but I was looking at 4 separate train lines with 8 storage carts each just to keep up with the demand, and compared to a pair of ender chests that seemed foolish instead of fun. So, ender chests won out.
The creosote oil my coke ovens produce powers another boiler at my base for processing the quarry's contents. Dirt, gravel, and marble go into the recyclers. Cobblestone goes through a Xycraft fabricator to turn it into slabs, which go into the recyclers.
I suppose someday I'll burn through all that scrap, but I only have 9 geothermals (lava from the nether, pumped into an ender tank), which won't run the mass fab for more than a half hour before the MFSU bottoms out and needs to fill again, so I'm not ready to be running it full-time. For that matter, I'm not sure what to do with the UU matter or the goodies from the quarry yet either. That's all "
step 2" stuff. I have a choo-choo so I'm happy.