Here are screenshots. The percentages for the first chapter seem kind of wonky as I don't know where you'd fit 47% more quests.
https://gyazo.com/7828fd1ccd6049e29590796cd6dd9eef
https://gyazo.com/2ecf9c6df3817f6ae50f4af04953355c
https://gyazo.com/ce3ae4e78909044d3ec1c3aaa270b8e3
https://gyazo.com/ebaf7854018a75fec1b53c728b4740a1
https://gyazo.com/c0e65e9715bdccc9ab3452ed211e3dc9
https://gyazo.com/bdb4b037e0746207ced5e4c5a3210def
The only quests not completed are some cooking quests, safari, and the yellow/green heart canisters I think. None of the ones not completed open up quests elsewhere, at least according to the book.
As far as the HQM quest walls go, I've got the two by the gate which have never changed and 2-3 on a island you know where which is probably the end game thing you're referring to.
I threw all the treasure chests in the ocean, they didn't seem to have a purpose until this version.
I'm assuming you have done the BACK TO THE NETHER quest on the Location Vocation page. I may have changed its name but its the one in the middle of the page. You need to get the Flint and Blaze that was given to you for completing that quest and put it in your inventory. Then open the book to make sure it has triggered the next phase of your quest line. You'll know it if it has. If you've already used the Flint and Blaze, you'll need to repair it first for it to work.
Don't worry about the percentages showing on some of the pages. They still contain hidden 'Trigger' quests that haven't been completed yet. They won't show up but as more of them are completed the % will increase until it reaches 100%.
Shame about the Treasure chests, my fault, I forgot to add the update list when I posted that 1.5.2 was available. I'd posted it to the moderators when requesting the update and somehow that managed to convince me I'd posted it for everyone. My bad.
Thanks to you posting this problem, it prompted me to go back and change the wording of the two quests that open that phase of the quest line. It also made me realize that when I moved the oreberry bush swap quests from the main line to the side line, that I forgot to add some for the sky platform line. Now that's an even bigger problem for me as I don't have enough spare quests left in the completed book and either have to do a lot of editing with the reserve book or change something elsewhere. I'll have to give this one some deep thought.
Hopefully you didn't also throw the Flint and Blaze in the ocean and you'll be able to use it to continue your quest. Thanks for bringing this to my attention as its helped to improve the pack for future players......