Hmm that is weird... Are you sure that the one with the higher cpu is not minecraft?The high CPU one seems to sometimes take more RAM than the actual Minecraft one. 2 GB vs 1GB. Also, I've disabled the console in the launcher and this is still happening.
Nothing that forcing an unexpected reboot can't fix(Please don't close explorer.exe if you have no idea how to restart it!)
Try importing your FTB instance into MultiMC and see if that has the same issue or not.Ok, its been happening again today. After about 10 minutes with the game open, one javaw.exe process overtakes the other in memory 2.2GB vs 1GB, and has abou 70% CPU utilization. If I kill that my fps goes back up to 100.