Just after posting yesterday at 5:51 PM, I ran the game again, with no changes to anything, as I had not yet seen your post. It ran like a dream, no problems whatsoever, even hitting 120fps at times (admittedly in places of low graphics activity).
I parked my character in an area where, in the past, it had been when many of crashes occurred, and went to bed. This morning all was still well, no crashes. The only thing wrong was that the Cursed Earth/Diamond Spikes mobdrop collector wasn't generating any mobs (it's fully chunkloaded), but restarting from within MC fixed that - and then the game crashed again, after having run smooth as silk for 12 hours.
So I renamed "EnderIO" to "AEnderIO" as you suggested, but that produced an error displayed in the load/run dialogue box (i.e., before the game actually started):
Time: 6/13/17 11:55 AM
Description: There was a severe problem during mod loading that has caused the game to fail
...with EnderIO still saying:
An unsupportted RF API is installed...
...and at the end...
=======================================================================
== ENDER IO FATAL ERROR ==
=======================================================================
Cannot register recipes as configured. This means that either
your custom config file has an error or another mod does bad
things to vanilla items or the Ore Dictionary.
=======================================================================
== Bad file ==
recipe_items_core.xml or recipe_items_user.xml
=======================================================================
== Error Message ==
Could not find a crafting ingredient for 'crystalFluix' (stack=null, object=null) in recipe 'Conduit, ME'
=======================================================================
=======================================================================
Note: To start the game anyway, you can disable recipe loading in the
Ender IO config file. However, then all of Ender IO's crafting recipes
will be missing.
=======================================================================
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
!!!You are looking at the diagnostics information, not at the crash. Scroll up!!!
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
CodeChickenLib Invalid Fingerprint Reports:
CodeChickenCore Invalid Fingerprint Reports:
EnderStorage Invalid Fingerprint Reports:
That was the end of the displayed message.
I restored "AEnderIO" to "EnderIO", and I'm now running the dame again, with the expectation that, sooner or later, it will crash agian.