Thanks for all the replies!
Then he needs an empty block between the Apiaries. Otherwise the excess bees could get transported in the wrong Apiary.
Wouldn't bees only go into the wrong apiary if I had green and blue open?
The iron pipe it pointing the wrong direction. Hit it with a wrench.
As far as I know it was changed from 1.4.7 to 1.5.2.
That would explain why the wiki has it backwards xD
This setup, as it is, will auto breed purebreds but you only get around 50% of the honeycombs. I can take a screen shot of a different setup I'm using that gives me every honeycomb. It still spits out bees that wont stack though[DOUBLEPOST=1378491542][/DOUBLEPOST]Oh my gosh, switching the iron pipes around worked perfectly :'D. Thanks a lot!
Instead of apiarist pipes you can also use insertion pipes (assuming they're in that pack). They're a bit cheaper resourcewise and you also don't need to set them up.
I have two kinds. One made with iron pipe and cactus green and one made with a block of lapis and tin. Which should I use?