Interestingly, if you have Refined Storage set up, it seems to always craft vanilla chests from auto-crafting, regardless of the type of wood used (I'm only growing spruce, set up the auto-craft pattern with spruce with oreDict checked, always get vanilla chests.)
I've found, at least in the packs I've played, that the vast majority of recipes that involve chests have changed to using oreDict chests, though that might have been done by the pack creators.
I will say, I kind of hate oak because something has changed with the way the Lumber Axe works, and it doesn't always get all of the big oak trees any longer. Once I have auto-farming it's not a big deal, but until then I prefer something else.