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Yes, that trait will stick, and sometimes its easier to apply a template of a bee you want and change the species then it is to change all the traits you want on the species you already have
Seems to me to be like a Level Bank, you right click it and it takes all your levels, click it again and it gives them to you in a edible piece of essence
If you replace it and replace all of the landmarks in the same spot, it will have less to clear to get back to where it was but essentially, no it restarts