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More info: I just looked into the configs and zinc, platinum, and manganese (possibly others) have "vein chance = 0" and "veins per chunk = 6]" We didn't alter this. Is it default for these not to spawn?
If I had to guess it's because manganese is, at least from my experiences, pretty easy to find, and can be combined with iron in a T-Con smeltery to create steel really easily, bypassing the need for mahna mahna. Or maybe someone just really hates Japanese comic books.