For those who would wonder - we've stayed with EnderIO. It's pipes are simple, lag-free and very effective.
Only problem I faced for now is that BF wrench has the same recipe as EnderIO wrench. Therefore, it's now impossible to craft EnderIO wrench. It wouldn't be much problem, since these two are compatible with each other, but Yeta Wrench (from EnderIO) is used in crafting mod filter. And if I can't craft Yeta Wrench, I can't craft mod filter as well... If someone knew the solution for this problem feel free to share
Once more thank you all very much!
@asiekierka I've tried different configurations, but nothing seemed to help. Anyway thank you for your input and good luck in your work. The mod you created is awesome, even if I can't make it work with my game