When you put the markers down, did you right click on one of them after you placed all 4? If you have a correct shape, the markers should be linked by a red laser. Once that is done, place the quarry next to a marker, OUTSIDE of the red laser. If done correctly, the laser should disappear, and you should get a message about chunks loaded (25 chunks for 64x64). If the yellow and black frame does not appear, dont panic. Quit FTB and reload the game, and the frame should appear. The quarry has rendering issues
M_ _ _ M
[] []
[] []
M_ _ _M
Q
The [] and _ are the lines of the lasers linking the markers. The M is a marker, and the Q is a qaurry.