1. Obtain "Hive" bees, make Apiary
2. Cross-breed Hive bees until you get Common-Cultivated-Noble-Majestic-Diligent-Unweary-Imperial-Industrious branches complete. See youtube for basic tutorials on this, such as GenerikB's series.
3. Get a lot of Pollen and Royal Jelly from your Imperial/Industrious bees
4. Make a lot of Alvearies
5. Make all the Genetics machines, including 5 Incubators in sequence: Water -> Incubator 1 -> Liquid Growth Medium -> Incubator 2 -> Bacteria -> Incubator 3, 4 and 5 -> Enzyme, Polymerizing Bacteria, Bacteria Vector. Must add sugar, wheat, bonemeal and blaze powder at various points along the way. See wiki if confused.
http://binnie.mods.wiki/wiki/Genetics
6. Make Ethanol using saplings in a Forestry Still.
7. Using NEI or a good wiki, start making all your 100's of different bee species by cross-breeding.
8. Set up a production line of Isolator - Analyzer - Sequencer. Isolator needs Ethanol.
9. When you obtain a new bee species, run extra drones thru the production line to identify and collect Genes. When identified, they will go into your Gene Database. Build a Lab Stand to put your Database on for easy use.
10. Run all excess "junk" drones thru a Genepool machine, required Ethanol. Collect Raw DNA (liquid) output in a tank or drum. You should have tons of excess, useless drones by now. You will need a lot to make DNA.
11. Make Polymerizer - Inoculator production line. Polymerizer requires Raw DNA and also Polymerizing Bacteria. Inoculator required Bacteria Vector.
12. Once you've collected a lot of different Genes, put a Hatchery in one of your Alvearies and obtain some Lavae.
13. Make a Serum Array.
14. Make a "Super Bee" - go to your Gene Database and select the Best Gene in each category and right click the Serum Array on the Gene. Species is irrelevant, but I use Cultivated Larvae since they already have "Shortest Lifespan" by default.
15. Once you have all 13 Genes to make a bee (or 12 since you probably won't need to change the bee species), place Serum Array in Polymerizer. Gold Nuggets speeds up process. Must have one charge for each larvae.
16. Place charged-up Serum Array in Inoculator with larvae. Wait approx. 2 hours and you will have your first "Super Bee" drone!
17. Make multiple Super Bee drones.
18. Use apaiary and soul frames to convert a random princess into a Super Bee princess using your newly made drones.
19. Make multiple copies of your Super Bee
20. Throw all your bees away, keep only your Super Bees.
21. Apply species to Super Bees using Steps #12-16 above. Take drones, make Princess of that species. Cross-breed a Princess and a Drone to get new species. This will go quickly since all Gene traits will be identical except for species.
22. Repeat until you have all the bees! When you get better Gene traits off some of your new bees, update your "Super Bee" with them occasionally.
I hope that helps! LOL I've been doing bees forever, I love em. No Gendustry for me, sorry, don't even know the mod.
Oh I forgot, you'll also need to do Forestry trees as well, because you'll need a lot of Seed Oil, and breeding Chestnut Trees is the best source. Same process as bees, kinda sorta, only different. LOL
My Super Bees are Cultivated Species, with Shortest Lifespan (longest is no good, takes too long to cross-breed), Fastest Production, Fertility 4x, Temp Tolerance "Both 2", Humidity Tolerance "Both 2", and Yes for all the Page 2 traits in the Beealyzer - Nocturnal, Diurnal, Tolerant Flyer, Caver. Flower type is your own preference, and Effect is usually None except for Chestnuts you might want an effect such as "Ripening" on your bees so your Chestnut trees ripen faster. Same for Territory and Pollination, useless unless you are pollinating trees with your bees.