Okay, so I am just testing out the Pipe stuff in the current FTB build, and it's not working. Items spill out right away, without trying other paths.
Are you sure that change is in the current build? <_<
Current FTB build? Certainly, otherwise jadedcat would've had a crazy, crazy mess with her impromptu sorting system. Which pipes are you using and what are they connected to? A sctreenshot would be even more illustrative.