I too have this problem. Last few lines of the minetweaker.log file show as;
INFO: Initialized 'EnderStorage.zs'
INFO: Initializing 'Gendustry.zs'...
INFO: Removing 1 recipes
INFO: Removing 1 recipes
INFO: Adding recipe for Industrial Apiary
INFO: Initialized 'Gendustry.zs'
WARNING: 2...