Oh I love this, I can just imagine the possibilities.Guys, this thread includes legitimately good ideas and I think none of us want it to be derailed. I think all of you owe and apology to @Riekka (misspell intentional).
To get this back on topic, I suggest you cannot make alloys (normally, maybe some crazy endgame way). To get the alloy you just have to breed the bees. Ex. Copper - Tin = Bronze
and
Redstone - Glowstone = Pulsuating Bee
Pulsuating - Iron = Pulsiating Iron Bee