Help with finalizing my frame quarry...

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What, exactly, does your button do? It doesn't appear to be hooked up to anything...

But if pressing it advances your frame machine forward a block, you could replace it with a ProjectRed or BluePower timer, with a Wireless (redstone) Reciever controlled by a Transmitter at your base to turn it on and off.
 
Oh- the button is hooked up to the item conduit, it sends my ME drives to my main base and back. I need to basically just figure out how to send a redstone signal the same length as a wooden button every 20 seconds now, but I can't do it with a timer since the signal it outputs is too fast.