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Not sure if you have solved your problem or not, but if you also have Waila in your pack, you need to update Waila to 1.5.8a
With that and with NotEnoughItems-1.7.10-1.0.4.83-universal.jar or newer should be fine.
I have my full instance managed in git, check-in a version every time I finished playing or changing configs/updating mods. So I can roll back any changes don't work well and the worst case the world corrupted I just lost few hours
In addition to what @mrbaggins said, Damage Indicators, Technomancy, Sanguimancy should be fine. Advanced Thaumaturgy is not updated to TC4.2 api so no.
You can only try it yourself to find out, especially some optional mod make big difference (e.g. IC2 which I never use)
Nope. The easiest way is to keep right-clicking grass land more than 4 blocks away from any water source, you'll get many seeds, one of them will be wheat seed
The easiest way is to re-create your world in the main menu and see what's the world type there.
Or use NBTExporer look at the level.dat in your world save to check the generatorName item