To fix the Guide API books roll back the guid-API jar to 1.0.20 release version. Sometimes beta is not always best. Tested it so far works well.
Also I added a crafting bench that holds it items, to used to Tinkers I guess called JACB Just another crafting bench I think its called. Also might like to give option to use node tracker as that's a nice mode for Thaumcraft IMO
I love the idea of the mod little unhappy about just how restrictive it is at time but I understand you reasons for it. Been having fun playing with Ars Magica again as I love that mod.
Also another tip don't break your storage book selves with the books in them or you lose you items. This made me very unhappy
Thank you for that, I will test a former version of the mod and back-port if it fixes the issue. I will make a survey available in-game for Thaumcraft Node Tracker.
Everyone may access this survey here: http://strawpoll.me/6735799